PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01221.1.p
Common NameLOC105972323, MIMGU_mgv1a000426mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-X1
Protein Properties Length: 1162aa    MW: 125454 Da    PI: 8.0887
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01221.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.12.8e-06341359119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C   CH GpC+pC+
  Migut.D01221.1.p 341 CGRHSCRNVCHVGPCDPCQ 359
                       ******************6 PP

2zf-NF-X119.22.6e-06559578120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H+C++lCH G CppCp+
  Migut.D01221.1.p 559 CGQHSCISLCHSGHCPPCPE 578
                       ******************96 PP

3zf-NF-X117.11.2e-05669684116
          zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                       CG H C+++CH+ pC+
  Migut.D01221.1.p 669 CGLHACSRICHPSPCD 684
                       ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.12E-7163234No hitNo description
PROSITE profilePS500168.814171232IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.45174230IPR001841Zinc finger, RING-type
PROSITE patternPS013590174229IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.74E-5263324No hitNo description
SMARTSM004380.025286304IPR000967Zinc finger, NF-X1-type
PfamPF014223.5288303IPR000967Zinc finger, NF-X1-type
CDDcd060081.47E-11331379No hitNo description
PfamPF014222.4E-5341358IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3E-4341360IPR000967Zinc finger, NF-X1-type
CDDcd060081.33E-6395438No hitNo description
PfamPF014220.2405422IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017405424IPR000967Zinc finger, NF-X1-type
CDDcd060085.05E-12453501No hitNo description
PfamPF014224.5E-4463481IPR000967Zinc finger, NF-X1-type
SMARTSM004386.7E-4463482IPR000967Zinc finger, NF-X1-type
PfamPF0142217521532IPR000967Zinc finger, NF-X1-type
SMARTSM00438230521555IPR000967Zinc finger, NF-X1-type
CDDcd060086.05E-9549601No hitNo description
PfamPF014222.3E-4559577IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001559578IPR000967Zinc finger, NF-X1-type
CDDcd060084.55E-5606654No hitNo description
PfamPF0142210616633IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039616634IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011669684IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013669701IPR000967Zinc finger, NF-X1-type
PfamPF01422110703729IPR000967Zinc finger, NF-X1-type
SMARTSM004380.35710731IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3306.3E-4956998IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MSFSEQNKPR ESSSQRPRNN NNLRDNRREW VPRGSVPVVS TPVATPVATP VPSPSVDSSS  60
QNANGNVGES VSRSVGPVPH RNKTHVGSRE NPPRYVSQRE THVGSRGNPP RYVSQRENHV  120
GSRGNPPRHV NHREKEKEKG KYNHNEDTKV FKGVNIPQLV QEIQEKLLKG SVECMICYDM  180
VRRSAPIWSC SSCYSIFHLN CIKKWARAPT SIDLLAEKNQ GFNWRCPGCQ HVQLTSAKEI  240
QYVCFCGKRP DPPSDLYLTP HSCGESCGKP LEREVPGGGM TNEDICPHSC VLQCHPGPCP  300
PCKAFAPPRR CPCGKKVIAT RCSDRKSVLT CGQTCDQLLD CGRHSCRNVC HVGPCDPCQV  360
LVNASCFCKK KTESVLCGDM IVKGEIKGED GVFSCNLTCE NQLNCSNHVC HETCHPGPCG  420
ECELLPSKIK TCCCGKTRLN DDRQSCLDPI PTCSEVCSKI LPCGSHSCKD MCHSGVCPPC  480
RVLVTQKCCC GSTSRTVECY RTTREDEKFT CNKPCGRKKS CGRHRCSDRC CPLSDSATSS  540
LVDWDPHQCS MPCEKKLRCG QHSCISLCHS GHCPPCPETI FTDLSCACGR TSIPPPLPCG  600
TLPPSCQYPC SVPQPCGHPS SHSCHLGDCP PCTVPIAKEC VGGHVVLRNI PCGSKDIRCN  660
KLCGKTRRCG LHACSRICHP SPCDSSSSAA SSTSSRASCG QTCGAPRREC RHTCTSLCHP  720
STMCPDVRCE FSVTITCSCG RITATVPCDA GGSTGGYNVD TVLEASVVQK LPVSLQPTEE  780
NGQKTPLGQR KLMCDDECTK VERKKVLADA FGVNPPNLDA LHFGENASVS EVLSDLLRRD  840
PKWVISVEER CRYLVLGRGR GGLTALKLHV FCVMTKEKRD AVRLIAERWK LSINAAGWEP  900
KRFLIVHVTP KSKAPARVLG LKTCTPSNML QPPIFDSLVD MDPRLVVALF DLPRDADVSA  960
LVLRFGGECE LVWLNDKNAL AVFSDPARAA TAMRRLDQGS VYYGAVVAPQ SGGGASSGAV  1020
LGSGGGAWGS GAPSKDAAVS SGVALKGNPW KKVVLKDSSD WSESSWGGAE EWATAANVSD  1080
SKSLPNLKAK EGPIASSSSS SNRWNVLQSG SSSTSAEASS VKVENVPESS SLSGSKMEER  1140
VSNMPGQQGG DVVDDWEKEC D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852722.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1 isoform X2
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A022QA750.0A0A022QA75_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1